Hi, I'm Juan Serrano, student and future researcher in IATA CSIC (València, Spain), I have an issue when I lauch Nextflow Taxprofiler pipeline adding bracken option. When the job is finished and I try to read the MUltiQC report, some samples appear in gray, like they have not been taken into account (strangely only the paired-ends samples appear in gray, but maybe it is not important). I hope anyone can help me. I've added a screenshot below.
Thaks, Juan.