I am running the pipeline in a Slurm cluster and I...
# raredisease
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I am running the pipeline in a Slurm cluster and I have skipped this germlinecnvcaller, but I am still asked for the parameters.
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nextflow run nf-core/raredisease --skip_tools gens,germlinecnvcaller  -revision  2.5.0 -params-file params.yaml

 N E X T F L O W   ~  version 24.10.6

Launching `<https://github.com/nf-core/raredisease>` [serene_heyrovsky] DSL2 - revision: 46afe31a36 [2.5.0]

params.ploidy_model not set.
params.gcnvcaller_model not set.
params.readcount_intervals not set.