Hello, I encountered a

nf-core linting

problem on a nf-core module `tabix/bgzip`: In

bgzip/meta.yml

line 43, there're single quote like this

- '*.gzi':

However, nf-core linting/prettier want to change it to double quote

- "*.gzi":

If it's changed, nf-core lint will complain that the module doesn't lint with the text message:

Local copy of module does not match remote

Does anyone have problem similar like this? Is there anyway that I can pass the check by Prettier but not change the original content of

bgzip/meta.yml

Simplest solution imo: fix it upstream 🙂

Yes! I'm thinking of submitting an issue to the bgzip module

Why not also a PR? Shouldn't be too difficult. I can give pointers if you need help 🙂

That will be great! Thank you so much ☺️. Let me read some instructions on how to submit a PR to the modules. Will reply here when I take actions.

You can create a new one called whatever you want and then pushed the changes to your fork and open a pr against master

Done 🙂 Though I failed to do a test with

nf-test test bgzip/tests/main.nf.test --profile docker

It had a problem of reaching test data directory:

Nextflow stdout:
ERROR ~ No such file or directory: nf-core/nf-core_modules/modules/nf-core/tabix/bgzip/.nf-test/tests/8d28a85252b9c46436b95483186b9c9b/nullgenomics/homo_sapiens/genome/genome.bed.gz

I'm looking into it right now.

No, it was fine to update the branch. In order to automatically trigger the CI checks you would need to be part of the nf-core org on github ( #CEB982K2T), but I added it now to the merge queue so it should be merged soon anyway

That’s great. Thank you!

thanks for the fix!