GitHub
06/16/2025, 11:29 AMpdc_kth in preparation for strict syntax.
• Moves cluster name evaluation into parameter using a called closure.
• Uses closure for singularity run Options.
• clusterOptionsCreator moved into clusterOptions closure.
• switch swapped to if because of strict syntax.
• String concatenation changed to add to list then join.
• Apply Nextflow code formatter.
• beforeScript because it's not called before images need to be pulled (i.e. user must do module load PDC apptainer themselves anyway).[WIP] in its title
• Your PR targets the master branch
• You've included links to relevant issues, if any
Steps for adding a new config profile:
• Add your custom config file to the conf/ directory
• Add your documentation file to the docs/ directory
• Add your custom profile to the nfcore_custom.config file in the top-level directory
• Add your profile name to the profile: scope in .github/workflows/main.yml
• OPTIONAL: Add your custom profile path and GitHub user name to .github/CODEOWNERS (**/<custom-profile>** @<github-username>)
nf-core/configsGitHub
06/16/2025, 11:29 AMGitHub
06/16/2025, 1:27 PM