Nelson Martins
06/12/2025, 7:41 AMnf-core/chipseq pipeline, but constantly get an Java related error, even when I do load the Java using module load Java/21.0.5 . Does anyone know what is happening?
Error message:
-- Check '.nextflow.log' file for details
ERROR ~ Cannot invoke "java.nio.file.Path.getFileSystem()" because "path" is null
-- Check script '/user/gent/479/vsc47925/.nextflow/assets/nf-core/chipseq/./subworkflows/local/utils_nfcore_chipseq_pipeline/../../nf-core/utils_nfcore_pipeline/main.nf' at line: 106 or see '.nextflow.log' file for more details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: <https://nf-co.re/docs/usage/troubleshooting>
-- Check '.nextflow.log' file for details
-[nf-core/chipseq] Pipeline completed with errors-