Hi, I just ran:

nextflow run nf-core/raredisease -revision 2.5.0 -profile test --outdir /home/azureuser/debug/

and got:

ROR ~ Workflow `NFCORE_RAREDISEASE:RAREDISEASE:ANNOTATE_MT_SNVS` declares 14 input channels but 13 were given

I can see in the workflow file on github it has 13 inputs:

ANNOTATE_MT_SNVS (
    CALL_SNV.out.mt_vcf,
    CALL_SNV.out.mt_tabix,
    ch_cadd_header,
    ch_cadd_resources,
    ch_genome_fasta,
    ch_vcfanno_extra,
    ch_vcfanno_lua,
    ch_vcfanno_resources,
    ch_vcfanno_toml,
    params.genome,
    params.vep_cache_version,
    ch_vep_cache,
    ch_vep_extra_files
).set { ch_mt_annotate }

But I have no idea what is missing or what is wrong.