A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:rocket: nf-core/tools v3.3.1 is here!
Key highlights:
• nf-test for pipelines - Pipeline-level testing is now part of the template with sharded CI for faster runs
• New `nf-core test-datasets` command - Easily discover and integrate test datasets from nf-core/test-datasets
• Multi-repository subworkflows - Install subworkflows with components from different repositories
:book: Full details including merge conflict guide: <https://nf-co.re/blog/2025/tools-3_3>
:youtube: Video walkthrough: <https://www.youtube.com/watch?v=7Sgz3FzlcRQ>
:ladybug: Issues? Drop by <#CE5LG7WMB|> channel

follow-up release <https://github.com/nf-core/tools/releases/tag/3.3.2|3.3.2> just went out. Mostly minor bug fixes, but we also raised the minimum python version to 3.9 and nextflow to 24.10.5