A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi, I am the main developer of methflow, my colleague Peng and I have joined the channel. We've already read the contributing guidelines. Should I create a new issue about our planned work and merge our modules in a forked repository? And Is there anything else I should pay attention to?

I believe that will be the way to go :+1:

Btw, is there a specific reason in methflow, alignment is done prior to mod basecalling? Im asking because in the current workflow we have basecalling done prior to alignment, will this be an issue for the incorporation?

Alignment doesn't have to be done before modcalling. Both ways are ok. We'll first merge the modules after Modcall.