A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

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*Hi everyone! I hope you're doing well.* :blush:
I managed to get the pipeline running—thank you so much for all the support so far! :pray: However, I’ve run into an issue where the pipeline throws an error related to the `samplesheet.csv` file.
Could you kindly take a look and let me know if there's anything wrong with the format of my `samplesheet.csv`? I’d really appreciate any guidance or suggestions to fix it.
Thanks again for your help!

I don't think it is the samplesheet, it seems like you are not specifying how you want to assemble

<https://nf-co.re/genomeassembler/1.0.1/docs/usage/#pre-set-profiles|https://nf-co.re/genomeassembler/1.0.1/docs/usage/#pre-set-profiles>

If none of the presets do what you want you will have to check the parameters and come up with a combination that works for you.

But your samplesheet seems strange as well

Are these correct filenames? `assembly.fasta.gz` seems out of place also