A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

When using `-profile` with an institutional config along with `-c`, how is the priority set? Do those provided to `-c` still take precedence?

I was about to link this, <https://www.nextflow.io/docs/latest/config.html#configuration-file>

VBut I realise it doesn't say :grimacing:

But `-c` is still the highest priority

Yeah, I saw that, and figured `-c` was still top dog, just wasn't sure.

One possible point of confusion regarding that could be only considering that and not <https://www.nextflow.io/docs/latest/config.html#selector-priority> - a lower priority configuration source can provide a more specific selector that would then win - but the highest priority (`-c ...`) can override those if they need to.