Evangelos Karatzas
05/10/2025, 3:03 PMrnaquast as an nf-core module, and here is the PR: https://github.com/nf-core/modules/pull/8432
I know it can have more input files, but these are the 3 (transcripts, reference, gtf) that the local module was also using, so I would like to see in a first iteration, if its container/environment is sufficient to produce similar results to yours (contains the same libs with no errors).
If possible, have a look at the PR and let me knowAvani Bhojwani
05/15/2025, 1:13 AM