Hello everyone, I ran the

metatdenovo

pipeline with the test dataset and have a question regarding the

featureCounts

output. Does the last column with the header “SAMPLE.sorted.bam” give me the counts for the corresponding gene/ORF, or what exactly does it represent? Thank you very much in advance! :)

The easiest source for orf counts is the

results/summary_tables/*counts.tsv.gz

. Overall, the tables in that subdirectory are meant to be easy to use.