Hi! I haven’t tried the pipeline yet but I think it looks great. Is there any existing functionality or planned development for assessing concordance between test VCFs (e.g., replicate comparisons)? I think this would be a useful feature.

Hello Jonas, thank you! I was thinking about adding mendelian concordance tests for trios but i havent done anything in that direction yet. But concordance test btw VCFs seems like a good idea too. Would you like to open an issue?