Mehrdad Jaberi
03/31/2025, 2:16 PMQuality control options
skip_qc : true
skip_fastqc : true
trimming options
save_trimmed : true
skip_trimming : true
Assembler options
user_assembly : /path/to/assembly.fa.gz
user_assembly_name : user_assembly
Mapping options
save_bam : true
save_samtools : true
Orf Caller options
orf_caller : transdecoder
I get:
Error executing process > 'NFCORE_METATDENOVO:METATDENOVO:COLLECT_STATS (user_assembly.transdecoder)'
Caused by:
No such variable: read_trimlogs -- Check script '~/.nextflow/assets/nf-core/metatdenovo/./workflows/../modules/local/collect/stats/main.nf' at line: 64
It looks like line 64 is not conditioned! or read_trimlogs is missing a default empty value?Daniel Lundin
03/31/2025, 2:19 PM