k that's GCI running now, just need to clean up ou...
# genomeassemblerm
Moray Smith
03/28/2025, 4:06 PMk that's GCI running now, just need to clean up outputs etc - looks like there is a locus with a drop in read coverage for the arabidopsis test data?
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Niklas Schandry
03/31/2025, 7:04 AMHuh, that is odd. I admit I never looked at what comes out of the test data
Niklas Schandry
03/31/2025, 7:05 AMIt was created by taking reads that map to a certain region of Col-CEN Chr1; but I never really looked into what they assemble into
Niklas Schandry
04/14/2025, 12:16 PMHey @Moray Smith how is GCI coming along? Is there anything you got stuck / need help with?
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Moray Smith
04/14/2025, 12:26 PMApologies I've been distracted with "real work" - the GCI + winnowmap modules are in place and it's functional, just need to run a couple more tests then handle the outputs properly
Moray Smith
04/14/2025, 12:27 PMLooks like the GCI bioconda recipe finally got merged so should be able to get a container image for it now as well 🙂
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Niklas Schandry
04/14/2025, 12:28 PMGreat, sure I understand that sometimes 'real work' comes up ðŸ«
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Niklas Schandry
06/16/2025, 12:18 PMHi @Moray Smith I am planning a new release in ~3 weeks or so, what is the current state of your efforts to add GCI to genomeassembler?