A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

image.png

Hi <!channel> I ran the nfcore riboseq pipeline with the attached samplesheet.csv, which I build following <https://github.com/nf-core/riboseq/blob/dev/assets/samplesheet.csv|this example>. However, the pipeline returns this warning in the logs:

```WARN: Found the following unidentified headers in /gpfs/commons/home/rmassoni/cll_btk_resistance/current/CLLU1/data/NtoufaBloodAdv2021/samplesheet.csv:
	- sample_description
	- pair
	- treatment
	- patient_id
	- original_id```
I'm worried about the `pair` variable: if  it is unidentified then the pipeline will not know how to pair the riboseq and rnaseq libraries. Do you have any thoughts on what could be going on? thanks in advance

I _think_ that's a validation message you can ignore for now.

And please, just a point of convention, please don't '@' whole channels, it's very noisy :slightly_smiling_face:

thanks Jonathan! and sorry, will make sure not to @ next time