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After running the pipeline, try running some nf-te...
# proteinfamilies
e
After running the pipeline, try running some nf-tests on the nf-core/modules repo!
n
I get this error when trying to run the pipeline with some test data: Pipeline completed with errors- ERROR ~ Error executing process > 'NFCORE_PROTEINFAMILIESPROTEINFAMILIESEXECUTE_CLUSTERING:MMSEQS_LINCLUST (CONTROL_REP1)' Caused by: Process requirement exceeds available CPUs -- req: 12; avail: 10. Is it possible to run locally?
e
you have to cap the required max allowed resources on the conf/base.config file
according to the machine you are running the pipeline on
n
OK - that makes sense.
I have capped the cpu and memory use for both MMSEQS_LINCLUST and CHUNK_CLUSTERS and am using this command: nextflow run nf-core/proteinfamilies -profile docker --input samplesheet.csv --outdir ./protfam_test. I'm still getting an error: Missing output file(s) 
chunked_fasta/*
expected by process CHUNK_CLUSTERS. Any ideas what this is expecting - sorry for the continuing messaging!
e
Not on a pc anymore today i am afraid. You can practice by visiting the work folders, and see the inputs and outputs of each process that ran, and pinpoint where the problem starts
And we can pick it up tomorrow
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