#862 Update bluebear.config Pull request opened by alexlyttle Some changes after user feedback. • Add

scratch_dir

variable which points to user scratch local to each compute node • Set environment variable

TMPDIR

to

scratch_dir

(this is not yet done automatically by the cluster) • Bind

scratch_dir

to singularity/apptainer via

runOptions

• Add

beforeScript

to ensure

scratch_dir

exists (the cluster does not currently guarantee this) • Remove

--qos

from

clusterOptions

as

bbshort

will be deprecated soon Please follow these steps before submitting your PR: • If your PR is a work in progress, include

[WIP]

in its title • Your PR targets the

master

branch • You've included links to relevant issues, if any nf-core/configs