Phyloplace 2.0.0 was just released! The main new feature, which motivates the jump from 1.0.0 directly to 2.0.0, is that the pipeline can now be used to first search a fasta file with hmm profiles, then place significant hits in a phylogeny that corresponds to the hmm it hit best. The old mode of the pipeline -- "phyloplace" -- is kept, but for sheet input now uses the

--phyloplace_input

param, which retires the

--input

param. The new mode -- "phylosearch" -- uses the

--phylosearch_input

param. The nf-core homepage is not yet updated, but when it is: Check out the documentation there. My thanks to my reviewers: @Daniel Straub, @Maxime Garcia and @mashehu and every other nf-core member I pestered with questions!