Question about the

fetchngs

pipeline I want to know if my data was retrieved correctly. Here is my output folder

.
├── custom
│   └── user-settings.mkfg
├── fastq
│   └── SRX24586143_SRR29061597.fastq.gz
├── metadata
│   └── SRR29061597.runinfo_ftp.tsv
├── nextflow.log
├── pipeline_info
│   ├── execution_report_2025-02-16_18-38-35.html
│   ├── execution_timeline_2025-02-16_18-38-35.html
│   ├── execution_trace_2025-02-16_18-38-35.txt
│   ├── nf_core_fetchngs_software_mqc_versions.yml
│   ├── params_2025-02-16_18-38-39.json
│   └── pipeline_dag_2025-02-16_18-38-35.html
└── samplesheet
    ├── id_mappings.csv
    ├── multiqc_config.yml
    └── samplesheet.csv

5 directories, 13 files

I’m wondering, is there a way to find the

md5

sums for the

SRX24586143_SRR29061597.fastq.gz

somewhere in these outputs? I’m wondering if one of these output files will have the

md5

sum of the file on NCBI and one will have the

md5

sum of the transferred file on my local machine. Is there also an easy way to view if the `md5`’s match between the files somewhere in these outputs? Has that already been precomputed?