A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Here is an additional issue, mostly dealing with exposing a few variables for `anota2seq`  which are required to get the process to succeed with real world data:
<https://github.com/nf-core/riboseq/issues/90>

I think there's only one actual bug in that list, which I've fixed quickly, the others seem more like feature requests?

That looks quite sensible. For the time being one could set the options via the ext args field? I agree, as long we the bugs are fixed we should aim for a release. Convenience features are a good addition for a future release

Maybe once the module and config changes are merged in, I can re-run the failed run and confirm that it works now?

I'm still confused by the contrast thing, looking at it now