Hello, I am getting the below error. Is there any way to add --nomodel and --extsize 147 as options? I am using single end reads

MACS3 needs at least 100 paired peaks at + and - strand to build the model, but can only find 47! Please make your MFOLD range broader and try again. If MACS3 still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead.

Hi, you can provide the pipeline a

custom.config

by adding

-c custom.config

to your nextflow command see this message 👉🏻 https://nfcore.slack.com/archives/CFP55NZ5G/p1721807127694569?thread_ts=1721777429.949169&cid=CFP55NZ5G