Hi guys. I may have found a tiny little bug in the pipeline. The

CALL_REPEAT_EXPANSIONS.out.versions

is being included in

ch_versions

twice: https://github.com/nf-core/raredisease/blob/da6ee67b159f465f78a013a9cac1d1e1a0162b50/workflows/raredisease.nf#L493 https://github.com/nf-core/raredisease/blob/da6ee67b159f465f78a013a9cac1d1e1a0162b50/workflows/raredisease.nf#L500C43-L500C78 while I could not find

ANNOTATE_REPEAT_EXPANSIONS.out.versions

included anywhere.

Ah good catch! Will fix it 😄