To me it would make sense then to provide a

gtdb-r220.params.yml

and a

gtdb-r220.samples.csv

with paths to files I hopefully manage to store somewhere (will keep you posted on my progress with that). (This would be slightly easier if a single fasta file could be provided with a parameter, skipping the input sheet, so that a single

params.yml

would suffice. I could contribute that at some point if you're happy with having

--input

voluntary.)