To make sure I understand what's done and not by #C062H82UCRG, specifically for my purpose (an amino acid GTDB database): I need to provide files for the

--prot2taxid

,

--nodesdmp

and

--namesdmp

params plus a name with the

--dbname

param and any

--build_*

params I need. Does the fasta file(s) go into the input sheet? (In my case, I have just one.) In my particular case, the above would boil down to a single step: calling

diamond createdb

with appropriate parameters, if I understand this correctly. (During today's meeting I thought there were provisions for named databases, i.e. build NCBI RefSeq for instance. (I should have read the manual...) This is not the idea, I assume? (This could perhaps be a case when ready-made

params.yml

and input sheets could be useful, i.e. a pair of files for GTDB, NCBI NR etc?)) (Would it possibly be an idea to include creation of the taxonomy dump from some standardized input format in the pipeline?)