A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi everyone, just curious if there are plans to allow for tailoring the samplesheet output to be accepted by nf-core/scrnaseq? I'm planning to daisy-chain the two pipelines together using nf-cascade, but I noticed that scrnaseq is not included in the pipelines that fetch-ngs can be piped to currently

As far as I'm aware, there's no effort for that yet

I'm planning to do <#CGFUX04HZ|> 1 day when I find time

If you're planning to nf-cascade the two, you might be able to add support for it in fetchngs yourself

Sounds good, I'll see if I can implement myself

But yeah, I don't think it'll be too different from <#CE8SSJV3N|>