Hí, I'm updating BUSCO module on #7199 , and I'm getting this linting error. The inputs are these:

input:
    tuple val(meta), path(fasta, stageAs:'tmp_input/*')
    val mode                              // Required:    One of genome, proteins, or transcriptome
    val lineage                           // Required:    lineage to check against, "auto" enables --auto-lineage instead
    path busco_lineages_path              // Recommended: path to busco lineages - downloads if not set
    path config_file                      // Optional:    busco configuration file

And the current meta:

input:
  - - meta:
        type: map
        description: |
          Groovy Map containing sample information
          e.g. [ id:'test', single_end:false ]
    - fasta:
        type: file
        description: Nucleic or amino acid sequence file in FASTA format.
        pattern: "*.{fasta,fna,fa,fasta.gz,fna.gz,fa.gz}"
  - - mode:
        type: string
        description: The mode to run Busco in. One of genome, proteins, or transcriptome
        pattern: "{genome,proteins,transcriptome}"
  - - lineage:
        type: string
        description: The BUSCO lineage to use, or "auto" to automatically select lineage
  - - busco_lineages_path:
        type: directory
        description: Path to local BUSCO lineages directory.
  - - config_file:
        type: file
        description: Path to BUSCO config file.

Why does this

to

new field need to be added to the input? What information should this field contain?

@mashehu @Júlia Mir for when you're back at work, I think @Diego Alvarez Saravia has found a really weird bug in

nf-core modules lint --fix

For some reason the linting fixer was picking up the third word in a comment and thought it was an input... 😅 See line 14 of the

<http://main.nf|main.nf>

here: https://github.com/nf-core/modules/pull/7199/commits/f3184f4da5b6f69d4fc8bc4a1e9a45329f857b3b I think it's because the fixer looks for any form of string called

path

and will take the word after it as an input, regardless if it's in a comment or not. By removing the word 'path' it then starting working.