Is it possible to specify the order of barplot entries in custom content? I end up with a plot like this, but would prefer the samples (rows) to be numerically sorted

Hey! By default the rows are sorted as strings, and it's a good idea to alpha-numerically sort them instead - I'll add that! For now, if you want to keep the order, you can use

pconfig.sort_samples = False

, like here: https://github.com/MultiQC/MultiQC/blob/25eb3cff74e043fa8e7fae0142dd9811d3907393/multiqc/modules/bcl2fastq/bcl2fastq.py#L142

Thanks a lot!