I’m having trouble with the

--kmerfinder_db

parameter. I can’t seem to use a remote link it gets invalidated by the validator. My command

nextflow run nf-core/bacass -r 2.4.0 -c nextflow.config -profile singularity --input samplesheet.tsv --kraken2db /ibex/ai/reference/KSL/kraken2/kraken2_dbs/scripts_download/k2_nt_20230502.tar.gz --kmerfinder_db=<ftp://ftp.cbs.dtu.dk/public/CGE/databases/KmerFinder/version/latest/bacteria.tar.gz> --ncbi_assembly_metadata=<https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/assembly_summary_refseq.txt> --outdir outputs/2024-11-26_15-KSA-samples

Snippet from the logs

Nov.-28 08:58:34.281 [main] DEBUG nextflow.validation.SchemaValidator - Starting parameters validation
Nov.-28 08:58:34.315 [main] WARN  nextflow.validation.SchemaValidator - The following invalid input values have been detected:

* --kmerfinder_db: <ftp://ftp.cbs.dtu.dk/public/CGE/databases/KmerFinder/version/latest/bacteria.tar.gz>

Could you try

--kmerfinder_db '<ftp://ftp.cbs.dtu.dk/public/CGE/databases/KmerFinder/version/latest/bacteria.tar.gz>'

(exactly that) as is detailed in https://nf-co.re/bacass/2.4.0/parameters/?