Prokka, like the more recent Bakta (never tried the latter so it might be different in the details), are suites of programs for genome annotation: gene calling + assigning function. Quite far from what you ask for and, AFIAK, one can't skip the gene calling step with one's own ORFs, so no way for protein sequences.
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Evangelos Karatzas
11/15/2024, 11:36 AM
I will be very sad if I can't multiqc in my pipeline anywhere at all xD
Evangelos Karatzas
11/15/2024, 11:36 AM
I'll have to explore custom outputs otherwise
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Daniel Lundin
11/15/2024, 11:38 AM
I'd go for custom like a summary of how many clusters were found with how many proteins etc.
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Evangelos Karatzas
11/15/2024, 11:52 AM
Yep, that is definitely interesting. Cluster size distribution plots as well. Per family sequence length distributions