Hi Spatial Team, I'm new with ST and nf-core. I'm slightly confused because .tif files are named by date, but there is no information about which samples are. Another thing is how to get the info corresponding to the slide and area. If someone can help me, please. 😇

Hi, Irelka! We can't really help you with your data files or exactly which slides were used for your experiment, as that's something that you have to provide to the pipeline. Did you get any information from the sequencing provider that handled your samples that you could refer to?

Hi Erik, Thanks to take the time 🤗 I got many files, but the files are not enough clears to match or to try with the usage shared :'(

in cytassist tifs, the slide and area is embedded as metadata. I never tried to extract it so I don't know how to do that, but I know it exists, because cellranger logging information shows if the metadata matches what you provided as input.

🤓Thank you Gregor, I will see that !