hello, i have a doubt about eukulele search. I am working with metatdenovo in uppmax to analyze metatranscriptomes, and the pipeline failed on the eukulele search, because it did not found the dababases. I tried to download the eukulele tool by conda on my session and my computer, however, something is happen that i cannot download (the conda installation is frozen for hours). Anyway, I found a phylodb database (used in other pipeline) and after downloaded and call it with the command --eukulele_dbpath the tool metatdenovo works well. My question is you have in uppmax a updated version of phylodb or gtdb to be sure that i am using a updated annotation? Thanks

Hi Carolina, there is an updated version in uppmax. We are currently working with the EUKulele's authors to get a new version and the ability to download gtdb by your own (so far it works only with PhyloDB as you noticed)

great! i can work with phylodb. Thanks!