#C0493FQQZ3P Hi, where can I find

Percent spliced in (PSI)

values after running

nf-core rnasplice

pipeline? I don’t see them in any of the files in the `rMATS`output folder. Please advise.

Look in

star_salmon/rmats/*/rmats_post/*.MATS.JC*.txt

, there are columns

IncLevel1

and

2

-- these are the PSI values for the samples in the respective samples.

IncLevelDifference

is their difference, i.e. the differential splicing.

@Thomas Danhorn great. Thank you very much.