Random tidbit about fq2bam and low-memory <https:/...
# pipeline-resource-optimizatione
Edmund
10/21/2024, 4:01 PMRandom tidbit about fq2bam and low-memory https://docs.nvidia.com/clara/parabricks/latest/gettingstarted.html#hardware-requirements
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Maxime Garcia
10/21/2024, 4:02 PMSystem Requirements:
A 2 GPU system should have at least 100GB CPU RAM and at least 24 CPU threads.
A 4 GPU system should have at least 196GB CPU RAM and at least 32 CPU threads.
A 8 GPU system should have at least 392GB CPU RAM and at least 48 CPU threads.
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Edmund
10/21/2024, 4:03 PMThe fq2bam tool requires at least 38 GB of GPU memory by default; theWas the part I was interested in, but yeah that's a good find.option will reduce this to 16 GB of GPU memory at the cost of slower processing. All other tools require at least 16 GB of GPU memory per GPU.--low-memory
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Maxime Garcia
10/21/2024, 4:06 PMyeah, that part was interesting too
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Sateesh_Peri
10/21/2024, 4:07 PMyeah I had to use the
--low-memoryr
Rike Hanssen
10/21/2024, 4:46 PMsame