Hi @Gisela Gabernet, have been doing AIRR analysis for a while & found this nf-core pipeline. I'm testing it for my TCR analysis and I find that the pipeline terminates prematurely if 1 of my samples do not have any clones after filtering. The error message says

*.productive.tsv

not found (can't remember correctly as I deleted my log files to re-run it). I know that I can set the

errorStrategy

in the

nextflow.config

file to adjust this but how do I know the process name involved? Thank you.

Hi Benjy, the process name is usually printed in the error message and the nextflow log.

So in this case, the process name would be CHANGEO_PARSEDB_SPLIT ? The full error message was:

Error executing process > 'NFCORE_AIRRFLOW:AIRRFLOW:VDJ_ANNOTATION:CHANGEO_PARSEDB_SPLIT (Hindbrain-Sample4)'

Caused by:
  Missing output file(s) `*productive-T.tsv` expected by process `NFCORE_AIRRFLOW:AIRRFLOW:VDJ_ANNOTATION:CHANGEO_PARSEDB_SPLIT (Hindbrain-Sample4)`

Yes, exactly