A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

I thought the biggest question was how to get the documentation and parameters rather than just how to run them?

yeah, for me the challenge is not really chaining the pipelines, we managed to do it already, and with a proper structure of the pipelines it's easy enough

For me, the reason to be able to chain nf-core pipelines is to allow for easier duplication of code and code adjacent stuff (config, params, schema, docs).

As I said before,

&gt; <https://github.com/nf-core/sarek/pull/1561>
&gt; Give me my pipeline

Running each workflow as it's own process circumvents that in my opinion, but when the route through `nf-core` tools is finalised, then that will definitely be a big issue