A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi! I just found this pipeline, looks nice! Can I expect this to run successfully already even though it's still in development?

Yes, it should work. Keen to see people using it!

I haven't set up a DOI for the pipeline yet for citation, so you might need to check back for that

Hmm, Trinity died with segfault, probably has nothing to do with the pipline though.

Could be a memory issue, if you are able try running once or twice more to see if it happens again.

Not sure, it seems to happen already at the normalization stage.

I also found the pipeline and testing it right now! I have a huge RNAseq dataset so I skip Trinity because I know it will run for weeks... But I also got memory issues with Spades, so I created a custom config file like this:
```process {
    withName: SPADES {
      cpus = 32
      memory = 170.GB
  }
}```
It's running now, but not sure it will complete...