Hello all, I have been trying to run nf-core/ribos...
# riboseq
s
Hello all, I have been trying to run nf-core/riboseq and I am able to successfully complete most modules except translation efficiency analysis. It probably has something to do with my contrasts file but I cant figure it out and I really appreciate any help. The error I get is
Command error:
Error in anota2seqCheckInput(dataP, dataT, phenoVec, batchVec, NULL, "BH",  :
Number of columns for dataT and dataP must be identical.
Calls: do.call -> <Anonymous> -> anota2seqCheckInput
Execution halted
My contrasts and samplesheet files are attached.
j
Hmm, I'm not seeing something obviously wrong. I'd have to poke about in the R for the task to figure out why it's not generating equal numbers of riboseq/ rnaseq samples internally. Are you able to share the work directory for that task? Feel free to zip it up an PM it to me if you can.