Any thoughts on this error? looks like it's about ...
# rnasplice
d
Any thoughts on this error? looks like it's about sample names (
all(samples$sample_id %in% colnames(counts)) is not TRUE
), but everything appears to be named and referenced correctly in my contrasts and samplesheet:
Copy code
ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)'

Caused by:
  Process `NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)` terminated with an error exit status (1)

Command executed:

  run_drimseq_filter.R salmon.merged.txi.dtu.rds tximport.tx2gene.tsv samplesheet_rnasplice.csv \
      4 \
      2 \
      2 \
      10 \
      0.1 \
      10

  cat <<-END_VERSIONS > versions.yml
  "NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER":
      r-base: $(echo $(R --version 2>&1) | sed 's/^.*R version //; s/ .*$//')
      bioconductor-drimseq: $(Rscript -e "library(DRIMSeq); cat(as.character(packageVersion('DRIMSeq')))")
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  INFO:    Converting SIF file to temporary sandbox...
  WARNING: Skipping mount /gs/gsfs0/home/dshecht1/.conda/envs/nfcore/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container

  Attaching package: 'DRIMSeq'

  The following object is masked from 'package:base':

      proportions

  Error in DRIMSeq::dmDSdata(counts = counts, samples = samps) :
    all(samples$sample_id %in% colnames(counts)) is not TRUE
  Calls: <Anonymous> -> stopifnot
  Execution halted
  INFO:    Cleaning up image...