Hi! I’m curious about this pipeline, is there a test output report I could have a look? I would like to see what is reported and how. Thanks!

Hello Eva! This pipeline is currently under active development. But, you can give it a try (which would make me extremely happy 🙃). You can test the pipeline with test (test.config and test_hg38_somatic.config, test_small.config works) profiles now. Please text me for any questions.

Hi! I just ran the test and test_hg38_somatic. I can see the summary files and plots but no report is generated (apart from the multiqc report, which has limited information). I’m assuming this is work in progress and it hasn’t been added yet, or am I missing something?

Hey, There should be benchmark reports per caller along with TP/FP/TN vcfs. What else do you need? What was on your mind 🙂 would be nice if you have ideas to share