I was trying to run rnasplice on a set of samples ...
# rnasplice
a
I was trying to run rnasplice on a set of samples but I got this error Workflow execution completed unsuccessfully! The exit status of the task that caused the workflow execution to fail was:
125
. The full error message was:
Copy code
Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:GENERATE_EVENTS_IOE (genes.gtf)'

Caused by:
  Process `NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:GENERATE_EVENTS_IOE (genes.gtf)` terminated with an error exit status (125)

Command executed:

  suppa.py \
      generateEvents \
      -i genes.gtf \
      -f ioe \
      -o events \
      -e SE SS MX RI FL \
      -b S \
      -t 10 \
      -l 100 \
      -p
  
  awk 'FNR==1 && NR!=1 { while (/^seqname/) getline; }  1 {print}' *.ioe > events.ioe
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:GENERATE_EVENTS_IOE":
      suppa: $(pip show suppa| sed -e '/Version/!d'| sed 's/Version: //g')
  END_VERSIONS

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image '<http://quay.io/biocontainers/suppa:2.3--py36_0|quay.io/biocontainers/suppa:2.3--py36_0>' locally
  2.3--py36_0: Pulling from biocontainers/suppa
  docker: [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of <http://quay.io/biocontainers/suppa:2.3--py36_0|quay.io/biocontainers/suppa:2.3--py36_0> to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at <https://docs.docker.com/go/deprecated-image-specs/>.
  See 'docker run --help'.

Work dir:
  /home/ahmed/work/4c/0c45764b75dcad2e41629dfca1152e

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
s
Try increasing memory for this process.
t
Seems to me an issue with getting the container -- can you download it manually?