AHMED ALARABI
05/22/2024, 1:38 PM125.
The full error message was:
Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:GENERATE_EVENTS_IOE (genes.gtf)'
Caused by:
Process `NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:GENERATE_EVENTS_IOE (genes.gtf)` terminated with an error exit status (125)
Command executed:
suppa.py \
generateEvents \
-i genes.gtf \
-f ioe \
-o events \
-e SE SS MX RI FL \
-b S \
-t 10 \
-l 100 \
-p
awk 'FNR==1 && NR!=1 { while (/^seqname/) getline; } 1 {print}' *.ioe > events.ioe
cat <<-END_VERSIONS > versions.yml
"NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:GENERATE_EVENTS_IOE":
suppa: $(pip show suppa| sed -e '/Version/!d'| sed 's/Version: //g')
END_VERSIONS
Command exit status:
125
Command output:
(empty)
Command error:
Unable to find image '<http://quay.io/biocontainers/suppa:2.3--py36_0|quay.io/biocontainers/suppa:2.3--py36_0>' locally
2.3--py36_0: Pulling from biocontainers/suppa
docker: [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of <http://quay.io/biocontainers/suppa:2.3--py36_0|quay.io/biocontainers/suppa:2.3--py36_0> to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at <https://docs.docker.com/go/deprecated-image-specs/>.
See 'docker run --help'.
Work dir:
/home/ahmed/work/4c/0c45764b75dcad2e41629dfca1152e
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`Sergio Manzano
05/22/2024, 3:01 PMThomas Danhorn
05/22/2024, 9:29 PM