Hi! I think the pipeline currently does not support epic2, right? Is there any Nextflow-based tool that can run epic2 analysis? Will epic2 be part of the next release of the pipeline?

Hi, 1. is not supported yet 2. I don’t think so as is not available as a module in our code base: https://nf-co.re/modules 3. There were no plans to add it, but contributions are more than welcome. Maybe also if you fancy open an issue on the repository (https://github.com/nf-core/chipseq/issues)