Dear community, I run:

nextflow run nf-core/fetchngs -profile test,docker --outdir test

, and I keep getting:

ERROR ~ Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP (SRX9504942_SRR13055518)'                                                                                                                                              
                                                                                                                                                                                                                                            
Caused by:                                                                                                                                                                                                                                  
 Process `NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP (SRX9504942_SRR13055518)` terminated with an error exit status (125)                                                                                                                           
                                                                                                                                                                                                                                            
Command executed:                                                                                                                                                                                                                           
                                                                                                                                                                                                                                            
 wget \                                                                                                                                                                                                                                    
     -t 5 -nv -c -T 60 \                                                                                                                                                                                                                   
     -O SRX9504942_SRR13055518_1.fastq.gz \                                                                                                                                                                                                
     <http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR130/018/SRR13055518/SRR13055518_1.fastq.gz|ftp.sra.ebi.ac.uk/vol1/fastq/SRR130/018/SRR13055518/SRR13055518_1.fastq.gz>                                                                                                                                                            
                                                                                                                                                                                                                                            
 echo "5ec894d863fcefe394470a0925aefde4 SRX9504942_SRR13055518_1.fastq.gz" > SRX9504942_SRR13055518_1.fastq.gz.md5                                                                                                                        
 md5sum -c SRX9504942_SRR13055518_1.fastq.gz.md5                                                                                                                                                                                           
                                                                                                                                                                                                                                            
 wget \                                                                                                                                                                                                                                    
     -t 5 -nv -c -T 60 \                                                                                                                                                                                                                   
     -O SRX9504942_SRR13055518_2.fastq.gz \                                                                                                                                                                                                
     <http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR130/018/SRR13055518/SRR13055518_2.fastq.gz|ftp.sra.ebi.ac.uk/vol1/fastq/SRR130/018/SRR13055518/SRR13055518_2.fastq.gz>                                                                                                                                                            
                                                                                                                                                                                                                                            
 echo "aead170df9851773d5202b5760c76d76 SRX9504942_SRR13055518_2.fastq.gz" > SRX9504942_SRR13055518_2.fastq.gz.md5                                                                                                                        
 md5sum -c SRX9504942_SRR13055518_2.fastq.gz.md5                                                                                                                                                                                           
                                                                                                                                                                                                                                            
 cat <<-END_VERSIONS > versions.yml                                                                                                                                                                                                        
 "NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP":                                                                                                                                                                                                      
     wget: $(echo $(wget --version | head -n 1 | sed 's/^GNU Wget //; s/ .*$//'))                                                                                                                                                          
 END_VERSIONS                                                                                                                                                                                                                              
                                                                                                                                                                                                                                            
Command exit status:                                                                                                                                                                                                                        
 125                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                            
Command output:                                                                                                                                                                                                                             
 (empty)                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                            
Command error:                                                                                                                                                                                                                              
 Unable to find image '<http://quay.io/biocontainers/wget:1.20.1|quay.io/biocontainers/wget:1.20.1>' locally                                                                                                                                                                          
 1.20.1: Pulling from biocontainers/wget                                                                                                                                                                                                   
 docker: [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of <http://quay.io/biocontainers/wget:1.20.1|quay.io/biocontainers/wget:1.20.1> to up
grade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at <https://docs.docker.com/go/deprecated-image-specs/>.                                                                                            
 See 'docker run --help'.

I successfully ran the pipeline in the past and seemingly without me changing anything I got a new error. I suppose there is some sort of problem with docker (

docker run hello-world

works). Could you hint me the possible solution? Thank you.

What is your docker version?

v4.29.0, seems to be the newest

I'm afraid that's the issue

Thank you, I will play around with docker

Please let us know how it goes

After downgrading to version 24.0.9 it works fine now.

Good news