chenzui
04/05/2024, 6:25 AMERROR ~ Error executing process > 'NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP (ERX1188904_ERR1109373)'
Caused by:
Process `NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP (ERX1188904_ERR1109373)` terminated with an error exit status (4)
Command executed:
wget \
-t 5 -nv -c -T 60 \
-O ERX1188904_ERR1109373_1.fastq.gz \
<http://ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz|ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_1.fastq.gz>
echo "9fd57225d6c07a31843276d6df9b15c0 ERX1188904_ERR1109373_1.fastq.gz" > ERX1188904_ERR1109373_1.fastq.gz.md5
md5sum -c ERX1188904_ERR1109373_1.fastq.gz.md5
wget \
-t 5 -nv -c -T 60 \
-O ERX1188904_ERR1109373_2.fastq.gz \
<http://ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_2.fastq.gz|ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/003/ERR1109373/ERR1109373_2.fastq.gz>
echo "5a62e8f785687dce890cfb4fe3e607f9 ERX1188904_ERR1109373_2.fastq.gz" > ERX1188904_ERR1109373_2.fastq.gz.md5
md5sum -c ERX1188904_ERR1109373_2.fastq.gz.md5
cat <<-END_VERSIONS > versions.yml
"NFCORE_FETCHNGS:SRA:SRA_FASTQ_FTP":
wget: $(echo $(wget --version | head -n 1 | sed 's/^GNU Wget //; s/ .*$//'))
END_VERSIONS
Command exit status:
4
Command output:
(empty)
Command error:
INFO: Converting SIF file to temporary sandbox...
WARNING: Skipping mount /usr/local/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container
wget: unable to resolve host address '<http://ftp.sra.ebi.ac.uk|ftp.sra.ebi.ac.uk>'
INFO: Cleaning up image...
Work dir:
/home/cz123/work/9e/210cbf548c09fd99bd7b78be9a6f05
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
-- Check '.nextflow.log' file for details
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