A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi, take a look to this thread here :point_right::skin-tone-2: <https://nfcore.slack.com/archives/CFP55NZ5G/p1707909564555199?thread_ts=1707581000.894389&amp;cid=CFP55NZ5G>

thank you for your reply Jose! I solved it as per this thread <https://nfcore.slack.com/archives/CFP55NZ5G/p1695848183964559> by adding the parameter `--skip_spp true`

see all script to run it below for those struggling with the same error:
```#!/bin/sh

export NXF_SINGULARITY_CACHEDIR="/camp/home/rossia/working/alice_r/nfcache/sing_images"

## LOAD REQUIRED MODULES
ml purge
ml Nextflow/23.10.0
ml Singularity/3.6.4
ml Graphviz

## UPDATE PIPELINE
nextflow pull nf-core/chipseq

## RUN PIPELINE
nextflow run nf-core/chipseq \
-resume \
 -r dev \
 -profile crick \
  --input samplesheet.csv \
  --read_length 200 \
  --outdir results_narrow \
  --genome mm10 \
  --aligner bowtie2 \
  --narrow_peak true \
  --skip_consensus_peaks true \
  --skip_peak_qc true \
  --skip_spp true \ ```