Is the chpseq pipeline abandoned? There haven’t been commits in two years and software is getting old

nope, still some action going on, if you look at the

dev

channel. just has been a bit since the last release.

OK, thanks. I am trying to decide between the nf-core and ENCODE pipelines. What are the major differences other than the workflow system and latest release? They seem to generally use the same steps and tools.

Maybe @Jose Espinosa-Carrasco can help you out there?

Hi, so is it better to try using the dev version?

The

dev

version has some fixes that the stable release do not have, in principle it should be safe to use it, we should probably give a little bit of love to the pipeline and plan a release