Hi 🙂 I have a dataset of Enhancer Capture Hi-C that I would like to process with the nf-core pipeline. Is it possible and if so do I need to pay particular attention to any specific parameters? I will happily provide more details if needed! 🙂 Thanks!

HI @Marcus Nygård / SDU, I think it should ok until the detection of valid pairs. Then, you will need to jump to other tool as I guess it does not make sense to generate a contact map in this case ?