Hello all, here (https://github.com/EUCANCan/oncoliner/tree/main) there is a cool project for somatic benchmarking. I did not go over it myself yet. It is the project in our last meting Johannas was suggesting it to wise.

I had a quick look and it seems a bit like a collection of python scripts that do the benchmarking? But maybe I am overlooking something.

this tool itself, makes benchmarks, harmonize variants and suggest improvements for the variant callers (as I understood). But it is not a pipeline, collection of python scripts. It would be interesting to see their logic behind since somatic benchmarking is not strait-forward.