ok, so which nf-core pipelines would be the target...
# benchmarkingm
Maxime Garcia
11/21/2023, 1:42 PMok, so which nf-core pipelines would be the targets of this pipeline?
r
Rike Hanssen
11/21/2023, 1:43 PMatm it seems like all the variantcalling pipelines, but imo we should really really clarify the interaction with NCBench first.
n
Nicolas Vannieuwkerke
11/21/2023, 1:47 PMMaybe we should do a general post in #C04QR0T3G3H and ask all maintainers if their pipeline could use this?
➕ 2
k
Kübra Narcı
11/21/2023, 1:52 PMI agree to @Rike Hanssen in that sense, yet how it would make sense if we start at least with SV benhmarking. since we now that is is pain in the ass
this 1
r
Rike Hanssen
11/21/2023, 1:55 PMsounds good to me
f
Florian Heyl
11/21/2023, 2:16 PMI would actually be interested in (several) bm pipelines for single cell. But that is a less straight forward topic than germline and SV benchmarking. But happy to exchange on that if people are interested.
🙌 1