A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

I found a <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7943210/|review> that lists some of the open access tools for cancer variant interpretation. They talk about the <https://search.cancervariants.org/#*|VICC meta-database> which harmonises cancer variant interpretations from multiple databases such as <https://www.cancergenomeinterpreter.org/home|CGI>, <https://civicdb.org/welcome|CIViC>, <https://ckb.jax.org/|JAX-CKB> and <https://www.oncokb.org/|OncoKB>. Details of the VICC database are given in this <https://www.nature.com/articles/s41588-020-0603-8|paper>.